densityratio (version 0.2.1)

lhss: Least-squares heterodistributional subspace search

Description

Least-squares heterodistributional subspace search

Usage

lhss(
  df_numerator,
  df_denominator,
  m = NULL,
  intercept = TRUE,
  scale = "numerator",
  nsigma = 10,
  sigma_quantile = NULL,
  sigma = NULL,
  nlambda = 10,
  lambda = NULL,
  ncenters = 200,
  centers = NULL,
  maxit = 200,
  progressbar = TRUE
)

Value

lhss-object, containing all information to calculate the density ratio using optimal sigma, optimal lambda and optimal weights.

Arguments

df_numerator

data.frame with exclusively numeric variables with the numerator samples

df_denominator

data.frame with exclusively numeric variables with the denominator samples (must have the same variables as df_denominator)

m

Scalar indicating the dimensionality of the reduced subspace

intercept

logical Indicating whether to include an intercept term in the model. Defaults to TRUE.

scale

"numerator", "denominator", or NULL, indicating whether to standardize each numeric variable according to the numerator means and standard deviations, the denominator means and standard deviations, or apply no standardization at all.

nsigma

Integer indicating the number of sigma values (bandwidth parameter of the Gaussian kernel gram matrix) to use in cross-validation.

sigma_quantile

NULL or numeric vector with probabilities to calculate the quantiles of the distance matrix to obtain sigma values. If NULL, nsigma values between 0.05 and 0.95 are used.

sigma

NULL or a scalar value to determine the bandwidth of the Gaussian kernel gram matrix. If NULL, nsigma values between 0.05 and 0.95 are used.

nlambda

Integer indicating the number of lambda values (regularization parameter), by default, lambda is set to 10^seq(3, -3, length.out = nlambda).

lambda

NULL or numeric vector indicating the lambda values to use in cross-validation

ncenters

Maximum number of Gaussian centers in the kernel gram matrix. Defaults to all numerator samples.

centers

Numeric matrix with the same variables as nu and de that are used as Gaussian centers in the kernel Gram matrix. By default, the matrix nu is used as the matrix with Gaussian centers.

maxit

Maximum number of iterations in the updating scheme.

progressbar

Logical indicating whether or not to display a progressbar.

References

Sugiyama, M., Yamada, M., Von Bünau, P., Suzuki, T., Kanamori, T. & Kawanabe, M. (2011). Direct density-ratio estimation with dimensionality reduction via least-squares hetero-distributional subspace search. Neural Networks, 24, 183-198. tools:::Rd_expr_doi("10.1016/j.neunet.2010.10.005").

Examples

set.seed(123)
# Fit model
dr <- naive(numerator_small, denominator_small)
# Inspect model object
dr
# Obtain summary of model object
summary(dr)
# Plot model object
plot(dr)
# Plot density ratio for each variable individually
plot_univariate(dr)
# Plot density ratio for each pair of variables
plot_bivariate(dr)
# Predict density ratio and inspect first 6 predictions
head(predict(dr))
# Fit model with custom parameters
naive(numerator_small, denominator_small, m=2, kernel="epanechnikov")