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depthTools (version 0.7)

Depth Tools Package

Description

Implementation of different statistical tools for the description and analysis of gene expression data based on the concept of data depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods. All these techniques are based on the Modified Band Depth, which is a recent notion of depth with a low computational cost, what renders it very appropriate for high dimensional data such as gene expression data.

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Version

Install

install.packages('depthTools')

Monthly Downloads

368

Version

0.7

License

GPL (>= 2)

Maintainer

Aurora Torrente

Last Published

May 24th, 2021

Functions in depthTools (0.7)

tmean

Modified Band Depth-Based Alpha Trimmed Mean
classDS

Distance to the Trimmed Mean Classification Method
scalecurve

Computation and Representation of the Scale Curve
prostate

Gene Expression Data from Tumoral and Normal Prostate Samples and Labels
R.test

Rank Test Based on the Modified Band Depth
MBD

Computation of the Modified Band Depth
centralPlot

Plot of the central curves
classTAD

Weighted Trimmed Mean Distance Classification Method