genomeRegions


Candidate Differentially Expressed Regions (DERs) for the example data. For more information check <a rd-options="" href="/link/calculatePvalues?package=derfinder&version=1.0.10" data-mini-rdoc="derfinder::calculatePvalues">calculatePvalues</a>.


datasets

Annotation-agnostic differential expression analysis of RNA-seq
data by calculating F-statistics at base-pair resolution

Leonardo Collado-Torres

derfinder

Annotation-agnostic differential expression analysis of RNA-seq
data at base-pair resolution

genomeRegions function

A list with four components.
<dl>
<dt>regions </dt><dd> a GRanges object with the candidate DERs.</dd> <dt>nullStats </dt><dd> a numeric Rle with the mean F-statistics for the null
DERs found from the permutations.</dd> <dt>nullWidths </dt><dd> an integer Rle with the width of each null candidate
DER.</dd> <dt>nullPermutation </dt><dd> an integer Rle with the permutation number for each
candidate DER. It identifies which permutation cycle created the null
candidate DER.</dd> </dl>

Format


Candidate Differentially Expressed Regions (DERs) for the example data. For more information check <a rd-options='' href='calculatePvalues'>calculatePvalues</a>.


genomeRegions: Candidate DERs for example data

Description

Arguments

Format

See Also