genomicState


Pre-computed genomic state for Hsapiens UCSC hg19 knownGene annotation built
using <a rd-options="derfinder" href="/link/makeGenomicState?package=derfinder&version=1.0.10&to=derfinder" data-mini-rdoc="derfinder::makeGenomicState">makeGenomicState</a> for
TxDb.Hsapiens.UCSC.hg19.knownGene version 2.14.0. The object has been subset
for chr21 only.


datasets

Annotation-agnostic differential expression analysis of RNA-seq
data by calculating F-statistics at base-pair resolution

Leonardo Collado-Torres

derfinder

Annotation-agnostic differential expression analysis of RNA-seq
data at base-pair resolution

genomicState function

A GRangesList with two components.
<dl>
<dt>fullGenome </dt><dd> classifies each region as either being exon, intron or
intragenic.</dd> <dt>codingGenome </dt><dd> classfies the regions as being promoter, exon, intro,
5UTR, 3UTR or intragenic.</dd> </dl>

Format


Pre-computed genomic state for Hsapiens UCSC hg19 knownGene annotation built
using <a rd-options='derfinder' href='makeGenomicState'>makeGenomicState</a> for
TxDb.Hsapiens.UCSC.hg19.knownGene version 2.14.0. The object has been subset
for chr21 only.


genomicState: Genomic State for Hsapiens.UCSC.hg19.knownGene

Description

Arguments

Format

See Also