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derfinderPlot

Addon package with plotting functions for derfinder results.

Installation instructions

Get R 3.1.1 or newer from CRAN.

## From Bioconductor
source('http://bioconductor.org/biocLite.R')
biocLite('derfinderPlot')

Vignette

The vignette for this package can be viewed here or via Bioconductor's website.

Citation

Use derfinder's citation information.

Travis CI

This package is automatically tested thanks to Travis CI and r-travis. If you want to add this to your own package use:

## Use devtools to create the .travis.yml file
library('devtools')
use_travis('yourPackage')

## Read https://github.com/craigcitro/r-travis/wiki to configure .travis.yml appropriately

## Add a status image by following the info at http://docs.travis-ci.com/user/status-images/

Testing on R-devel for Bioc-devel is feasible thanks to r-builder.

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Version

Version

1.0.3

License

Artistic-2.0

Issues

Pull Requests

Stars

Forks

Maintainer

Leonardo Collado-Torres

Last Published

February 15th, 2017

Functions in derfinderPlot (1.0.3)

derfinderPlot-package

Plotting functions for derfinder
plotCluster

Plot the coverage information surrounding a region cluster
plotOverview

Plot a karyotype overview of the genome with the identified regions
plotRegionCoverage

Makes plots for every region while summarizing the annotation