matrix with nArray rows and nRIL columns.
Elements of 1/0 indicate this RIL (or strain) is/not selected
for this array.
condition.allocation
matrix with nCondition rows and nRIL columns.
Elements of 1/0 indicate this RIL (or strain) is/not selected
for this condition.
nRILs
number of RILs or strains available for the experiment.
nSlides
total number of slides available for experiment.
Value
A list with the following two elements:
new.array.allocation: an updated array allocation table
new.condition.allocation: an updated condition allocation table
Details
This function is used only for designing a dual-channel experiment where samples
need to be paired.
References
Y. Li, R. Breitling and R.C. Jansen. Generalizing genetical
genomics: the added value from environmental perturbation, Trends Genet
(2008) 24:518-524.
Y. Li, M. Swertz, G. Vera, J. Fu, R. Breitling, and R.C. Jansen. designGG:
An R-package and Web tool for the optimal design of genetical genomics
experiments. BMC Bioinformatics 10:188(2009)
http://gbic.biol.rug.nl/designGG