exampleArrayDesignTable


<code>exampleArrayDesignTable</code>: Example data of <code>exampleArrayDesignTable</code> for a 
hypothetical dual-channel microarray experiment in which there are 100 strains  
(e.g. recombinant inbred lines) and 27 arrays available. Two environmental factors 
(temperature and cell type) are considered in this experiment. There are three 
levels for temperature (15, 24 and 29) and four levels for cell types (A,B,C,D).
This table tells how to pair samples into arrays.  
<pre>
data(exampleArrayDesignTable) 
exampleArrayDesignTable[1:5,]</pre>
<table><tr><td>
            </td>
<td> Channel 1 </td>
</tr><tr><td> Channel 2 </td>
<td> 
array1      </td>
</tr><tr><td> Strain28    </td>
<td> Strain92 </td>
</tr><tr><td>    
array2      </td>
<td> Strain70    </td>
</tr><tr><td> Strain47 </td>
<td>    
array3      </td>
</tr><tr><td> Strain22    </td>
<td> Strain89 </td>
</tr><tr><td>    
array4      </td>
<td> Strain45    </td>
</tr><tr><td> Strain15 </td>
<td>    
array5      </td>
</tr><tr><td> Strain52    </td>
<td> Strain41 </td>
</tr></table>


datasets

The package provides R scripts for designing genetical
genomics experiments.

Yang Li

designGG

Computational tool for designing genetical genomics experiments.

exampleArrayDesignTable function

<code>exampleArrayDesignTable</code>: 27 arrays by two channels.

exampleArrayDesignTable: Example output of ArrayDesignTable data

Description

Usage

Arguments

Format

Examples

	Channel 1
Channel 2	array1
Strain28	Strain92
array2	Strain70
Strain47	array3
Strain22	Strain89
array4	Strain45
Strain15	array5
Strain52	Strain41