snpInRun

<p>vector of TRUE/FALSE (is a window homozygous/heterozygous?)</p>

RunVector

windowSize

threshold

<p>This is a core function. The function to determine whether a SNP is or not in a RUN.
The ratio between homozygous/heterozygous windows and total n. of windows is computed here</p>

Detection of runs of homozygosity and of heterozygosity
in diploid genomes using two methods: sliding windows (Purcell et al (2007)
<doi:10.1086/519795>) and consecutive runs (Marras et al (2015)
<doi:10.1111/age.12259>).

Filippo Biscarini

detectRUNS

Detect Runs of Homozygosity and Runs of Heterozygosity in
Diploid Genomes

Paolo Cozzi

Giustino Gaspa

Gabriele Marras

snpInRun function

Function to return a vector of T/F for whether a SNP is or not in a RUN — snpInRun

Function to return a vector of T/F for whether a SNP is or not in a RUN

snpInRun: Function to return a vector of T/F for whether a SNP is or not in a RUN

Description

Usage

Arguments

Value