⚠️There's a newer version (0.6.15) of this package.Take me there.

detrendr (version 0.1.0)

Detrend Images

Description

Image series affected by bleaching must be corrected by 'detrending' prior to the performance of quantitative analysis. 'detrendr' is for correctly detrending images. It uses Nolan's algorithm (Nolan et al., 2017 ).

Copy Link

Version

Install

install.packages('detrendr')

Monthly Downloads

871

Version

0.1.0

License

BSD_3_clause + file LICENSE

Maintainer

Rory Nolan

Last Published

October 24th, 2017

Functions in detrendr (0.1.0)

brightness_pillars

Get the brightness of pillars of a 3d array.

detrended_img

Detrended image class.

apply_on_pillars

Apply a function to each pillar of a 3-dimensional array.

best_degree

Find the best polynomial degree for polynomial detrending.

pillar-stats

Get the means/medians/variances of pillars of a 3d array.

read_tif

Read tiff image as array object.

best_l

Find the best length parameter for boxcar detrending.

best_tau

Find the best tau parameter for exponential smoothing detrending.

write_tif

Write an integer array to disk as a tiff image.