detrendr

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy (FCS and FFS) analysis. This package contains functionality published in a 2016 paper https://doi.org/10.1093/bioinformatics/btx434 but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Installation

You can install the release version of detrendr from CRAN with:

install.packages("detrendr")

You can install the (unstable) development version of detrendr from GitHub with:

devtools::install_github("rorynolan/detrendr")

I highly recommend using the release version. The dev version is just for the ultra-curious and should be thought of as unreliable.

How to use the package

See the package website at https://rorynolan.github.io/detrendr.

Contribution

Contributions to this package are welcome. The preferred method of contribution is through a github pull request. Feel free to contact me by creating an issue. Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.