install_bioc

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Install a package from a Bioconductor repository

This function requires svn to be installed on your system in order to be used.

Usage
install_bioc(repo, mirror = getOption("BioC_svn",
  "https://hedgehog.fhcrc.org/bioconductor"), ..., quiet = FALSE)
Arguments
repo

Repository address in the format [username:password@][release/]repo[#revision]. Valid values for the release are ‘devel’ (the default if none specified), ‘release’ or numeric release numbers (e.g. ‘3.3’).

mirror

The bioconductor SVN mirror to use

...

Other arguments passed on to install

quiet

if TRUE suppresses output from this function.

Details

It is vectorised so you can install multiple packages with a single command.

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See Also

Other package installation: install_bitbucket, install_cran, install_github, install_git, install_svn, install_url, install_version, install, uninstall

Aliases
  • install_bioc
Examples
# NOT RUN {
install_bioc("SummarizedExperiment")
install_bioc("user@SummarizedExperiment")
install_bioc("user:password@release/SummarizedExperiment")
install_bioc("user:password@3.3/SummarizedExperiment")
install_bioc("user:password@3.3/SummarizedExperiment#117513")
# }
Documentation reproduced from package devtools, version 1.13.3, License: GPL (>= 2)

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