droplet_data

<p>Minimum number of read counts a droplet must have to 
be output.</p>

min_counts

<p>Return the data frame stored in the slot <code>droplet_data</code>. This 
contains data such as number of counts and genes in each droplet, as 
well as some of the output from the filtering, such as whether the 
droplet is classified as debris or cell/nucleus. The parameter 
<code>min_counts</code> filters out droplets (rows) by removing those 
with counts below this number</p>

Identification of debris-containing droplets
from a droplet-based single cell/nucleus RNA-seq. 'diem' uses
the expression profile of background RNA droplets, followed
by expectation maximization (EM), to assign candidates as
debris or nuclei. See Alvarez M, Rahmani E, et al (2019)
<doi:10.1101/786285> for details.

Marcus Alvarez

droplet_data: Return the droplet data from an SCE object

Description

Usage

Arguments

Value