filter_genes

<p>The minimum CPM threshold for removing genes.</p>

cpm_thresh

verbose

<p>This function removes genes that are lowly expressed. 
The droplets are split into the test set and debris set, and the Counts 
Per Million mapped reads (CPM) are calculated for each. Then, only genes 
that have a CPM of at least <code>cpm_thresh</code> in both the test set and 
debris set are kept.</p>

Identification of debris-containing droplets
from a droplet-based single cell/nucleus RNA-seq. 'diem' uses
the expression profile of background RNA droplets, followed
by expectation maximization (EM), to assign candidates as
debris or nuclei. See Alvarez M, Rahmani E, et al (2019)
<doi:10.1101/786285> for details.

Marcus Alvarez

filter_genes: Filter out lowly expressed genes

Description

Usage

Arguments

Value