get_knn

Number of nearest neighbors to use.

Logical indicating whether to weigh the knn graph.

weighted

verbose

Run a KNN graph and store as an igraph object. The nearest neighbors 
are calculated using the dbscan implementation. The edges 
of the graph can be weighted with the inverse of the 
euclidean distance.

Identification of debris-containing droplets
from a droplet-based single cell/nucleus RNA-seq. 'diem' uses
the expression profile of background RNA droplets, followed
by expectation maximization (EM), to assign candidates as
debris or nuclei. See Alvarez M, Rahmani E, et al (2019)
<doi:10.1101/786285> for details.

get_knn: Get k-nearest neighbor graph

Description

Usage

Arguments

Value