norm_counts

counts

A numeric scaling factor to 
multiply values after dividing counts matrix by total counts.

scale_factor

A logical indicating whether to log transform after 
normalizing for columns to sum to 1 and multiplying by scaling factor.

logt

Normalize counts of a sparse matrix

Identification of debris-containing droplets
from a droplet-based single cell/nucleus RNA-seq. 'diem' uses
the expression profile of background RNA droplets, followed
by expectation maximization (EM), to assign candidates as
debris or nuclei. See Alvarez M, Rahmani E, et al (2019)
<doi:10.1101/786285> for details.

norm_counts: Normalize counts of a sparse matrix

Description

Usage

Arguments

Value