emPolarise

Changes encodings of genomic markers according to user specification.

Likelihood-based genome polarisation finds which alleles of genomic markers
belong to which side of the barrier.
Co-estimates which individuals belong to either side of the barrier and barrier strength.
Uses expectation maximisation in likelihood framework. The method is described in
Baird et al. (2023) <doi:10.1111/2041-210X.14010>.

Natalia Martinkova

diemr

Diagnostic Index Expectation Maximisation in R

Stuart Baird

emPolarise function

<dl><dt>origM</dt>
<dd>A character vector of genotypes comprising of _012 encodings.</dd>
<dt>changePolarity</dt>
<dd>A logical scalar, indicating whether to leave the marker as is
(<code>FALSE</code>) or whether to change its polarity (<code>TRUE</code>).</dd></dl>

Arguments

Polarises a marker — emPolarise

<dl>

<dt>origM</dt>
<dd>A character vector of genotypes comprising of _012 encodings.</dd>


<dt>changePolarity</dt>
<dd>A logical scalar, indicating whether to leave the marker as is
(<code>FALSE</code>) or whether to change its polarity (<code>TRUE</code>).</dd>

</dl>

emPolarise: Polarises a marker

Description

Usage

Value

Arguments

See Also

Examples