diffloop

diffloop-package

The diffloop package contains a suite of tools and S4 data objects to
efficiently facilitate the analysis of ChIA-PET datasets. Key features
include differential loop calling, visualization of looping in regions,
quality-control metrics, and principal component analysis across 
experiments.

A suite of tools for subsetting, visualizing, annotating,
        and statistically analyzing the results of one or more ChIA-PET
        experiments.

Caleb Lareau

Differential DNA loop calling from ChIA-PET data

diffloop function

Three classes mostly comprise the methodology in <code>diffloop</code>. First,
<code>loops</code> is a basic structure that contains one or more ChIA-PET
experiments, <code>loopfit</code> links an <code>edgeR</code> fit to a <code>loops</code>
and currently has little functionality except for generating another
<code>loops</code> object where per-loop summary statistics are added.

diffloop: diffloop: A package for differential DNA loop calling from ChIA-PET data

Description

Arguments

diffloop classes