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diffusionMap (version 0.0-1)

Diffusion map

Description

Implements diffusion map method of data parametrization, including creation and visualization of diffusion map and course-graining using diffusion K-means.

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Version

Install

install.packages('diffusionMap')

Monthly Downloads

1,991

Version

0.0-1

License

GPL-2

Maintainer

Joseph Richards

Last Published

May 8th, 2009

Functions in diffusionMap (0.0-1)

Chainlink

Chainlink toy clustering data set
distortionMin

Distortion Minimization via K-means
diffusionKmeans

Diffusion K-means
plot.dmap

Plot diffusion map
annulus

Annulus toy data set
diffuse

Compute diffusion map coordinates from pair-wise distances.
print.dmap

Extract diffusion map eigen-multipliers and epsilon
epsilonCompute

Compute default diffusion map epsilon.