bulk.simul

bulk.simul,DigitalDLSorter-method

bulk.simul&lt;-

bulk.simul&lt;-,DigitalDLSorter-method

Get and set <code>bulk.simul</code> slot in a
<code>DigitalDLSorter</code> object

Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input. These models are able to make accurate estimates of the cell composition of bulk RNA-Seq samples from the same context using the advances provided by Deep Learning and the meaningful information provided by scRNA-Seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> for more details.

Diego Ma<c3><b1>anes

digitalDLSorteR

Deconvolution of Bulk RNA-Seq Data Based on Deep Learning

Diego Mañanes

Carlos Torroja

Fatima Sanchez-Cabo

bulk.simul function

<dl><dt>object</dt>
<dd><code>DigitalDLSorter</code> object.</dd>
<dt>type.data</dt>
<dd>Element of the list. Can be <code>'train'</code>, <code>'test'</code> or
<code>'both'</code> (the last by default).</dd>
<dt>value</dt>
<dd>List with two elements, train and test, each one being
a <code>SummarizedExperiment</code> object with simulated bulk
RNA-Seq samples.</dd></dl>

Arguments

Get and set bulk.simul slot in a
DigitalDLSorter object — bulk.simul

<dl>

<dt>object</dt>
<dd><code>DigitalDLSorter</code> object.</dd>


<dt>type.data</dt>
<dd>Element of the list. Can be <code>'train'</code>, <code>'test'</code> or
<code>'both'</code> (the last by default).</dd>


<dt>value</dt>
<dd>List with two elements, train and test, each one being
a <code>SummarizedExperiment</code> object with simulated bulk
RNA-Seq samples.</dd>

</dl>

bulk.simul: Get and set `bulk.simul` slot in a `DigitalDLSorter` object

Description

Usage

Arguments