deconv.data

deconv.data,DigitalDLSorter-method

deconv.data&lt;-

deconv.data&lt;-,DigitalDLSorter-method

Get and set <code>deconv.data</code> slot in a
<code>DigitalDLSorter</code> object

Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input. These models are able to make accurate estimates of the cell composition of bulk RNA-Seq samples from the same context using the advances provided by Deep Learning and the meaningful information provided by scRNA-Seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> for more details.

Diego Ma<c3><b1>anes

digitalDLSorteR

Deconvolution of Bulk RNA-Seq Data Based on Deep Learning

Diego Mañanes

Carlos Torroja

Fatima Sanchez-Cabo

deconv.data function

<dl><dt>object</dt>
<dd><code>DigitalDLSorter</code> object.</dd>
<dt>name.data</dt>
<dd>Name of the data. If <code>NULL</code> (by default), all
data contained in the <code>deconv.data</code> slot are returned.</dd>
<dt>value</dt>
<dd>List whose names are the reference of the stored data.</dd></dl>

Arguments

Get and set deconv.data slot in a
DigitalDLSorter object — deconv.data

<dl>

<dt>object</dt>
<dd><code>DigitalDLSorter</code> object.</dd>


<dt>name.data</dt>
<dd>Name of the data. If <code>NULL</code> (by default), all
data contained in the <code>deconv.data</code> slot are returned.</dd>


<dt>value</dt>
<dd>List whose names are the reference of the stored data.</dd>

</dl>

deconv.data: Get and set `deconv.data` slot in a `DigitalDLSorter` object

Description

Usage

Arguments