getProbMatrix

Getter function for the cell composition matrix. This function allows to
access to the cell composition matrix of simulated training or test
pseudo-bulk RNA-Seq data.

Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input. These models are able to make accurate estimates of the cell composition of bulk RNA-Seq samples from the same context using the advances provided by Deep Learning and the meaningful information provided by scRNA-Seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> for more details.

Diego Ma<c3><b1>anes

digitalDLSorteR

Deconvolution of Bulk RNA-Seq Data Based on Deep Learning

Diego Mañanes

Carlos Torroja

Fatima Sanchez-Cabo

getProbMatrix function

<dl><dt>object</dt>
<dd><code>DigitalDLSorter</code> object with
<code>prob.cell.types</code> slot.</dd>
<dt>type.data</dt>
<dd>Subset of data to e shown: <code>train</code> or <code>test</code>.</dd></dl>

Arguments

Getter function for the cell composition matrix — getProbMatrix

<dl>

<dt>object</dt>
<dd><code>DigitalDLSorter</code> object with
<code>prob.cell.types</code> slot.</dd>


<dt>type.data</dt>
<dd>Subset of data to e shown: <code>train</code> or <code>test</code>.</dd>

</dl>

getProbMatrix: Getter function for the cell composition matrix

Description

Usage

Value

Arguments

See Also