prob.matrix

prob.matrix,ProbMatrixCellTypes-method

prob.matrix&lt;-

prob.matrix&lt;-,ProbMatrixCellTypes-method

Get and set <code>prob.matrix</code> slot in a
<code>ProbMatrixCellTypes</code> object

Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input. These models are able to make accurate estimates of the cell composition of bulk RNA-Seq samples from the same context using the advances provided by Deep Learning and the meaningful information provided by scRNA-Seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> for more details.

Diego Ma<c3><b1>anes

digitalDLSorteR

Deconvolution of Bulk RNA-Seq Data Based on Deep Learning

Diego Mañanes

Carlos Torroja

Fatima Sanchez-Cabo

prob.matrix function

<dl><dt>object</dt>
<dd><code>ProbMatrixCellTypes</code> object.</dd>
<dt>value</dt>
<dd>Matrix with cell types as columns and samples as
rows.</dd></dl>

Arguments

Get and set prob.matrix slot in a
ProbMatrixCellTypes object — prob.matrix

<dl>

<dt>object</dt>
<dd><code>ProbMatrixCellTypes</code> object.</dd>


<dt>value</dt>
<dd>Matrix with cell types as columns and samples as
rows.</dd>

</dl>

prob.matrix: Get and set `prob.matrix` slot in a `ProbMatrixCellTypes` object

Description

Usage

Arguments