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dimRed

A Framework for Dimensionality Reduction for the R language.

A collection of dimensionality reduction techniques from R packages and provides a common interface for calling the methods.

Installing:

## install.packages("devtools")
devtools::install_github("gdkrmr/dimRed")

Install from CRAN

## not yet possible, but once it is on there use:
install.packages("dimRed")

Load it:

library(dimRed)

Install dependencies:

## The package dependencies are not installed automatically:
dimRed::installSuggests()

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Install

install.packages('dimRed')

Monthly Downloads

3,880

Version

0.0.3

License

GPL-3 | file LICENSE

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Maintainer

Guido Kraemer

Last Published

January 19th, 2017

Functions in dimRed (0.0.3)

distance_correlation,dimRedResult-method

Method distance_correlation
dataSets

Example Data Sets for dimensionality reduction
mean_R_NX,dimRedResult-method

Method mean_R_NX
LCMC,dimRedResult-method

Method LCMC
getDimRedData

Method getDimRedData
makeKNNgraph

makeKNNgraph
maximize_correlation,dimRedResult-method

Maximize Correlation with the Axes
installSuggests

getSuggests
getMeta

Method getMeta
mixColorRamps

Mixing color ramps
getOrgData

Method getOrgData
getPars

Method getPars
plot_R_NX

plot_R_NX
print

Method print
R_NX,dimRedResult-method

Method R_NX
reconstruction_rmse,dimRedResult-method

Method reconstruction_rmse
Q_local,dimRedResult-method

Method Q_local
ndims

Method ndims
Q_global,dimRedResult-method

Method Q_global
Q_NX,dimRedResult-method

Method Q_NX
plot

Plotting of dimRed* objects
quality,dimRedResult-method

Quality Criteria for dimensionality reduction.
total_correlation,dimRedResult-method

Method total_correlation
dimRedMethodList

dimRedMethodList
AUC_lnK_R_NX,dimRedResult-method

Method AUC_lnK_R_NX
as.data.frame

Converts to data.frame
dimRed-package

The dimRed package
as.dimRedData

Converts to dimRedData
embed

dispatches the different methods for dimensionality reduction
cophenetic_correlation,dimRedResult-method

Method cophenetic_correlation
getData

Method getData