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dimRed (version 0.2.5)
A Framework for Dimensionality Reduction
Description
A collection of dimensionality reduction techniques from R packages and a common interface for calling the methods.
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Install
install.packages('dimRed')
Monthly Downloads
1,701
Version
0.2.5
License
GPL-3 | file LICENSE
Maintainer
Guido Kraemer
Last Published
March 10th, 2022
Functions in dimRed (0.2.5)
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DiffusionMaps-class
Diffusion Maps
DRR-class
Dimensionality Reduction via Regression
Isomap-class
Isomap embedding
KamadaKawai-class
Graph Embedding via the Kamada Kawai Algorithm
HLLE-class
Hessian Locally Linear Embedding
FruchtermanReingold-class
Fruchterman Reingold Graph Layout
FastICA-class
Independent Component Analysis
MDS-class
Metric Dimensional Scaling
LaplacianEigenmaps-class
Laplacian Eigenmaps
DrL-class
Distributed Recursive Graph Layout
PCA_L1-class
Principal Component Analysis with L1 error.
Q_NX,dimRedResult-method
Method Q_NX
AUC_lnK_R_NX,dimRedResult-method
Method AUC_lnK_R_NX
dimRedMethodList
dimRedMethodList
dimRedMethod-class
Class "dimRedMethod"
AutoEncoder-class
AutoEncoder
R_NX,dimRedResult-method
Method R_NX
Q_global,dimRedResult-method
Method Q_global
UMAP-class
Umap embedding
Q_local,dimRedResult-method
Method Q_local
as.data.frame
Converts to data.frame
LCMC,dimRedResult-method
Method LCMC
LLE-class
Locally Linear Embedding
getOrgData
Method getOrgData
getNDim
Method getNDim
embed
dispatches the different methods for dimensionality reduction
kPCA-class
Kernel PCA
getPars
Method getPars
getOtherData
Method getOtherData
maximize_correlation,dimRedResult-method
Maximize Correlation with the Axes
getData
Method getData
mixColorRamps
Mixing color ramps
getDimRedData
Method getDimRedData
as.dimRedData
Converts to dimRedData
makeKNNgraph
makeKNNgraph
tSNE-class
t-Distributed Stochastic Neighborhood Embedding
reconstruction_rmse,dimRedResult-method
Method reconstruction_rmse
mean_R_NX,dimRedResult-method
Method mean_R_NX
getMeta
Method getMeta
getRotationMatrix
getRotationMatrix
nMDS-class
Non-Metric Dimensional Scaling
total_correlation,dimRedResult-method
Method total_correlation
installSuggests
getSuggests
dimRedData-class
Class "dimRedData"
reconstruction_error,dimRedResult-method
Method reconstruction_error
quality,dimRedResult-method
Quality Criteria for dimensionality reduction.
dimRed-package
The dimRed package
cophenetic_correlation,dimRedResult-method
Method cophenetic_correlation
dataSets
Example Data Sets for dimensionality reduction
NNMF-class
Non-Negative Matrix Factorization
PCA-class
Principal Component Analysis
dimRedResult-class
Class "dimRedResult"
ndims
Method ndims
distance_correlation,dimRedResult-method
Method distance_correlation
plot
Plotting of dimRed* objects
print
Method print
plot_R_NX
plot_R_NX