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dismo (version 0.8-11)
Species distribution modeling
Description
Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.
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Install
install.packages('dismo')
Monthly Downloads
10,019
Version
0.8-11
License
GPL (>= 3)
Maintainer
Robert Hijmans
Last Published
March 14th, 2013
Functions in dismo (0.8-11)
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ModelEvaluation
Class "ModelEvaluation"
bioclim
Bioclim
Circles
Circles range
gbm.simplify
gbm simplify
DistModel
Class "DistModel"
gbif
Data from GBIF
boxplot
Box plot of model evaluation data
dismo-package
Species distribution modeling
mahal
Mahalanobis model
maxent
Maxent
Geographic Distance
Geographic distance model
gridSample
Stratified regular sample on a grid
ssb
Spatial sorting bias
pointValues
point values
lookup
lookup
randomPoints
Random points
ecocrop
Ecocrop model
predict
Distribution model predictions
gbm.fixed
gbm fixed
pairs
Pair plots
dcEvaluate
Evaluate by distance class
pwdSample
Pair-wise distance sampling
evaluate
Model evaluation
prepareData
Prepare data for model fitting
kfold
k-fold partitioning
response
response plots
domain
Domain
plot
Plot predictor values
calc.deviance
Calculate deviance
Convex Hull
Convex hull model
voronoi
Voronoi polygons
Random null model
Random null model
gbm.plot.fits
gbm plot fitted values
biogeomancer
Georeferencing
gbm.holdout
gbm holdout
threshold
Find a threshold
gbm.interactions
gbm interactions
Anguilla data
Anguilla australis distribution data
mess
Multivariate environmental similarity surfaces (MESS)
biovars
bioclimatic variables
gbm.step
gbm step
InvDistW
Inverse-distance weighted model
gbm.plot
gbm plot
ecolim
Ecolim model
acaule
Solanum acaule data
evaluateROCR
Model testing with the ROCR package
gmap
Get a Google map
nicheEquivalency
Niche equivalency
gbm.perspec
gbm perspective plot
geocode
Georeferencing with Google
Evaluation plots
Plot model evaluation data
nicheOverlap
Niche overlap
Voronoi Hull
Voronoi hull model
density
density