dismo v0.8-17


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by Robert Hijmans

Species distribution modeling

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.

Functions in dismo

Name Description
ecocrop Ecocrop model
ModelEvaluation Class "ModelEvaluation"
gbm.step gbm step
mahal Mahalanobis model
gbm.plot gbm plot
gbm.simplify gbm simplify
pointValues point values
plot Plot predictor values
pwdSample Pair-wise distance sampling
voronoi Voronoi polygons
mess Multivariate environmental similarity surfaces (MESS)
DistModel Class "DistModel"
InvDistW Inverse-distance weighted model
evaluateROCR Model testing with the ROCR package
density density
pairs Pair plots
biovars bioclimatic variables
domain Domain
Random null model Random null model
gbm.holdout gbm holdout
randomPoints Random points
dismo-package Species distribution modeling
bioclim Bioclim
gridSample Stratified regular sample on a grid
acaule Solanum acaule data
Circles Circles range
Convex Hull Convex hull model
dcEvaluate Evaluate by distance class
ecolim Ecolim model
biogeomancer Georeferencing
geocode Georeferencing with Google
nicheEquivalency Niche equivalency
gbm.interactions gbm interactions
nicheOverlap Niche overlap
lookup lookup
kfold k-fold partitioning
Voronoi Hull Voronoi hull model
maxent Maxent
predict Distribution model predictions
calc.deviance Calculate deviance
gmap Get a Google map
threshold Find a threshold
gbm.plot.fits gbm plot fitted values
evaluate Model evaluation
prepareData Prepare data for model fitting
Geographic Distance Geographic distance model
gbm.perspec gbm perspective plot
gbif Data from GBIF
ssb Spatial sorting bias
Anguilla data Anguilla australis distribution data
Evaluation plots Plot model evaluation data
boxplot Box plot of model evaluation data
response response plots
gbm.fixed gbm fixed
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Type Package
Date 2013-07-11
License GPL (>= 3)
LazyLoad yes
Packaged 2013-07-11 17:56:59 UTC; rhijmans
NeedsCompilation yes
Repository CRAN
Date/Publication 2013-07-12 07:34:13

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