dismo v0.9-1

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by Robert Hijmans

Species distribution modeling

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.

Functions in dismo

Name Description
density density
evaluate Model evaluation
maxent Maxent
dcEvaluate Evaluate by distance class
Geographic Distance Geographic distance model
Evaluation plots Plot model evaluation data
biovars bioclimatic variables
gbm.simplify gbm simplify
randomPoints Random points
acaule Solanum acaule data
gbm.plot.fits gbm plot fitted values
calc.deviance Calculate deviance
pairs Pair plots
ModelEvaluation Class "ModelEvaluation"
gbm.fixed gbm fixed
pointValues point values
Circles Circles range
gbm.step gbm step
bioclim Bioclim
ecolim Ecolim model
mess Multivariate environmental similarity surfaces (MESS)
voronoi Voronoi polygons
geocode Georeferencing with Google
kfold k-fold partitioning
nicheEquivalency Niche equivalency
gbm.plot gbm plot
Voronoi Hull Voronoi hull model
nicheOverlap Niche overlap
plot Plot predictor values
mahal Mahalanobis model
Anguilla data Anguilla australis distribution data
pwdSample Pair-wise distance sampling
InvDistW Inverse-distance weighted model
predict Distribution model predictions
boxplot Box plot of model evaluation data
domain Domain
gridSample Stratified regular sample on a grid
gmap Get a Google map
lookup lookup
biogeomancer Georeferencing
threshold Find a threshold
ecocrop Ecocrop model
Random null model Random null model
response response plots
ssb Spatial sorting bias
Convex Hull Convex hull model
dismo-package Species distribution modeling
prepareData Prepare data for model fitting
gbm.interactions gbm interactions
evaluateROCR Model testing with the ROCR package
gbif Data from GBIF
gbm.perspec gbm perspective plot
DistModel Class "DistModel"
gbm.holdout gbm holdout
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Details

Type Package
Date 2013-11-18
License GPL (>= 3)
LazyLoad yes
Repository CRAN
Repository/R-Forge/Project dismo
Repository/R-Forge/Revision 523
Repository/R-Forge/DateTimeStamp 2013-11-19 01:04:36
Date/Publication 2013-12-12 09:56:40
Packaged 2013-12-12 08:28:35 UTC; ripley
NeedsCompilation yes

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