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dismo (version 0.9-1)
Species distribution modeling
Description
Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.
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Install
install.packages('dismo')
Monthly Downloads
9,706
Version
0.9-1
License
GPL (>= 3)
Maintainer
Robert Hijmans
Last Published
December 12th, 2013
Functions in dismo (0.9-1)
Search functions
density
density
evaluate
Model evaluation
maxent
Maxent
dcEvaluate
Evaluate by distance class
Geographic Distance
Geographic distance model
Evaluation plots
Plot model evaluation data
biovars
bioclimatic variables
gbm.simplify
gbm simplify
randomPoints
Random points
acaule
Solanum acaule data
gbm.plot.fits
gbm plot fitted values
calc.deviance
Calculate deviance
pairs
Pair plots
ModelEvaluation
Class "ModelEvaluation"
gbm.fixed
gbm fixed
pointValues
point values
Circles
Circles range
gbm.step
gbm step
bioclim
Bioclim
ecolim
Ecolim model
mess
Multivariate environmental similarity surfaces (MESS)
voronoi
Voronoi polygons
geocode
Georeferencing with Google
kfold
k-fold partitioning
nicheEquivalency
Niche equivalency
gbm.plot
gbm plot
Voronoi Hull
Voronoi hull model
nicheOverlap
Niche overlap
plot
Plot predictor values
mahal
Mahalanobis model
Anguilla data
Anguilla australis distribution data
pwdSample
Pair-wise distance sampling
InvDistW
Inverse-distance weighted model
predict
Distribution model predictions
boxplot
Box plot of model evaluation data
domain
Domain
gridSample
Stratified regular sample on a grid
gmap
Get a Google map
lookup
lookup
biogeomancer
Georeferencing
threshold
Find a threshold
ecocrop
Ecocrop model
Random null model
Random null model
response
response plots
ssb
Spatial sorting bias
Convex Hull
Convex hull model
dismo-package
Species distribution modeling
prepareData
Prepare data for model fitting
gbm.interactions
gbm interactions
evaluateROCR
Model testing with the ROCR package
gbif
Data from GBIF
gbm.perspec
gbm perspective plot
DistModel
Class "DistModel"
gbm.holdout
gbm holdout