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dismo (version 0.9-3)
Species distribution modeling
Description
Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.
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Install
install.packages('dismo')
Monthly Downloads
8,871
Version
0.9-3
License
GPL (>= 3)
Maintainer
Robert Hijmans
Last Published
December 15th, 2013
Functions in dismo (0.9-3)
Search functions
gbm.plot
gbm plot
Anguilla data
Anguilla australis distribution data
Evaluation plots
Plot model evaluation data
voronoi
Voronoi polygons
predict
Distribution model predictions
pwdSample
Pair-wise distance sampling
ecolim
Ecolim model
boxplot
Box plot of model evaluation data
geocode
Georeferencing with Google
gbm.step
gbm step
domain
Domain
nicheEquivalency
Niche equivalency
pairs
Pair plots
calc.deviance
Calculate deviance
ssb
Spatial sorting bias
bioclim
Bioclim
Geographic Distance
Geographic distance model
plot
Plot predictor values
randomPoints
Random points
nicheOverlap
Niche overlap
acaule
Solanum acaule data
gbm.interactions
gbm interactions
ModelEvaluation
Class "ModelEvaluation"
prepareData
Prepare data for model fitting
gbm.perspec
gbm perspective plot
mahal
Mahalanobis model
gbm.simplify
gbm simplify
gbm.fixed
gbm fixed
gbif
Data from GBIF
density
density
DistModel
Class "DistModel"
dcEvaluate
Evaluate by distance class
gbm.holdout
gbm holdout
evaluate
Model evaluation
gmap
Get a Google map
response
response plots
maxent
Maxent
ecocrop
Ecocrop model
biovars
bioclimatic variables
gridSample
Stratified regular sample on a grid
InvDistW
Inverse-distance weighted model
Voronoi Hull
Voronoi hull model
Circles
Circles range
threshold
Find a threshold
dismo-package
Species distribution modeling
gbm.plot.fits
gbm plot fitted values
kfold
k-fold partitioning
evaluateROCR
Model testing with the ROCR package
Random null model
Random null model
Convex Hull
Convex hull model
lookup
lookup
mess
Multivariate environmental similarity surfaces (MESS)
pointValues
point values