dismo v1.0-12

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by Robert Hijmans

Species Distribution Modeling

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.

Functions in dismo

Name Description
gbm.step gbm step
Anguilla data Anguilla australis distribution data
Voronoi Hull Voronoi hull model
Convex Hull Convex hull model
mahal Mahalanobis model
threshold Find a threshold
nicheOverlap Niche overlap
calc.deviance Calculate deviance
maxent Maxent
dismo-package Species distribution modeling
pointValues point values
evaluateROCR Model testing with the ROCR package
nicheEquivalency Niche equivalency
prepareData Prepare data for model fitting
gmap Get a Google map
DistModel Class "DistModel"
gbif Data from GBIF
Geographic Distance Geographic distance model
Circles Circles range
gbm.interactions gbm interactions
ModelEvaluation Class "ModelEvaluation"
pwdSample Pair-wise distance sampling
dcEvaluate Evaluate by distance class
acaule Solanum acaule data
gbm.simplify gbm simplify
kfold k-fold partitioning
gbm.plot.fits gbm plot fitted values
gbm.plot gbm plot
randomPoints Random points
gbm.perspec gbm perspective plot
evaluate Model evaluation
gbm.fixed gbm fixed
boxplot Box plot of model evaluation data
ecolim Ecolim model
plot Plot predictor values
geocode Georeferencing with Google
biovars bioclimatic variables
density density
Random null model Random null model
voronoi Voronoi polygons
ecocrop Ecocrop model
response response plots
ssb Spatial sorting bias
bioclim Bioclim
predict Distribution model predictions
Evaluation plots Plot model evaluation data
gbm.holdout gbm holdout
mess Multivariate environmental similarity surfaces (MESS)
domain Domain
gridSample Stratified regular sample on a grid
InvDistW Inverse-distance weighted model
pairs Pair plots
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Details

Type Package
Date 2015-3-14
License GPL (>= 3)
LazyLoad yes
Packaged 2015-03-15 05:20:50 UTC; ripley
NeedsCompilation yes
Repository CRAN
Date/Publication 2015-03-15 06:22:22

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