dismo v1.0-15


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by Robert Hijmans

Species Distribution Modeling

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites.

Functions in dismo

Name Description
Geographic Distance Geographic distance model
gridSample Stratified regular sample on a grid
dismo-package Species distribution modeling
maxent Maxent
Evaluation plots Plot model evaluation data
response response plots
nicheOverlap Niche overlap
voronoi Voronoi polygons
evaluateROCR Model testing with the ROCR package
biovars bioclimatic variables
density density
Voronoi Hull Voronoi hull model
gbm.simplify gbm simplify
boxplot Box plot of model evaluation data
pointValues point values
gbm.fixed gbm fixed
pwdSample Pair-wise distance sampling
Random null model Random null model
evaluate Model evaluation
Convex Hull Convex hull model
Anguilla data Anguilla australis distribution data
prepareData Prepare data for model fitting
domain Domain
gbm.plot.fits gbm plot fitted values
threshold Find a threshold
ecocrop Ecocrop model
gbm.interactions gbm interactions
ModelEvaluation Class "ModelEvaluation"
gbif Data from GBIF
pairs Pair plots
gbm.plot gbm plot
gbm.step gbm step
plot Plot predictor values
predict Distribution model predictions
acaule Solanum acaule data
InvDistW Inverse-distance weighted model
ecolim Ecolim model
ssb Spatial sorting bias
DistModel Class "DistModel"
mahal Mahalanobis model
dcEvaluate Evaluate by distance class
calc.deviance Calculate deviance
gbm.perspec gbm perspective plot
kfold k-fold partitioning
Circles Circles range
gmap Get a Google map
geocode Georeferencing with Google
randomPoints Random points
nicheEquivalency Niche equivalency
mess Multivariate environmental similarity surfaces (MESS)
bioclim Bioclim
gbm.holdout gbm holdout
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Type Package
Date 2016-1-09
License GPL (>= 3)
LazyLoad yes
NeedsCompilation yes
Packaged 2016-01-11 10:13:55 UTC; ripley
Repository CRAN
Date/Publication 2016-01-11 11:18:30

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