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dismo (version 1.1-1)

Species Distribution Modeling

Description

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites and the environment at these sites.

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Version

Install

install.packages('dismo')

Monthly Downloads

9,181

Version

1.1-1

License

GPL (>= 3)

Maintainer

Robert Hijmans

Last Published

June 16th, 2016

Functions in dismo (1.1-1)

acaule

Solanum acaule data
density

density
CirclesRange

Circles range
dismo-package

Species distribution modeling
calc.deviance

Calculate deviance
boxplot

Box plot of model evaluation data
biovars

bioclimatic variables
Convex Hull

Convex hull model
bioclim

Bioclim
dcEvaluate

Evaluate by distance class
Anguilla data

Anguilla australis distribution data
ecocrop

Ecocrop model
domain

Domain
ecolim

Ecolim model
evaluateROCR

Model testing with the ROCR package
gbm.fixed

gbm fixed
gbm.holdout

gbm holdout
DistModel

Class "DistModel"
gbif

Data from GBIF
evaluate

Model evaluation
gbm.plot.fits

gbm plot fitted values
gbm.perspec

gbm perspective plot
gbm.interactions

gbm interactions
gmap

Get a Google map
gbm.step

gbm step
Geographic Distance

Geographic distance model
gbm.simplify

gbm simplify
InvDistW

Inverse-distance weighted model
gbm.plot

gbm plot
geocode

Georeferencing with Google
mahal

Mahalanobis model
pairs

Pair plots
Random null model

Random null model
gridSample

Stratified regular sample on a grid
kfold

k-fold partitioning
mess

Multivariate environmental similarity surfaces (MESS)
ModelEvaluation

Class "ModelEvaluation"
nicheEquivalency

Niche equivalency
nicheOverlap

Niche overlap
maxent

Maxent
plot

Plot predictor values
randomPoints

Random points
prepareData

Prepare data for model fitting
Evaluation plots

Plot model evaluation data
pointValues

point values
response

response plots
ssb

Spatial sorting bias
Rectangular Hull

Rectangular hull model
predict

Distribution model predictions
pwdSample

Pair-wise distance sampling
voronoi

Voronoi polygons
threshold

Find a threshold
Voronoi Hull

Voronoi hull model