dismo v1.1-4


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Species Distribution Modeling

Functions for species distribution modeling, that is, predicting entire geographic distributions form occurrences at a number of sites and the environment at these sites.

Functions in dismo

Name Description
Convex Hull Convex hull model
acaule Solanum acaule data
circleHull Circle hull model
boxplot Box plot of model evaluation data
density density
dcEvaluate Evaluate by distance class
biovars bioclimatic variables
CirclesRange Circles range
bioclim Bioclim
calc.deviance Calculate deviance
Anguilla data Anguilla australis distribution data
gbm.fixed gbm fixed
ecocrop Ecocrop model
domain Domain
DistModel Class "DistModel"
dismo-package Species distribution modeling
ecolim Ecolim model
evaluate Model evaluation
gbif Data from GBIF
evaluateROCR Model testing with the ROCR package
gbm.perspec gbm perspective plot
gbm.plot.fits gbm plot fitted values
maxent Maxent
mess Multivariate environmental similarity surfaces (MESS)
pairs Pair plots
gbm.holdout gbm holdout
plot Plot predictor values
gbm.interactions gbm interactions
randomPoints Random points
pwdSample Pair-wise distance sampling
voronoi Voronoi polygons
Geographic Distance Geographic distance model
Voronoi Hull Voronoi hull model
nicheOverlap Niche overlap
Random null model Random null model
InvDistW Inverse-distance weighted model
rectHull Rectangular hull model
response response plots
gmap Get a Google map
gridSample Stratified regular sample on a grid
predict Distribution model predictions
gbm.plot gbm plot
prepareData Prepare data for model fitting
gbm.simplify gbm simplify
nicheEquivalency Niche equivalency
Evaluation plots Plot model evaluation data
ModelEvaluation Class "ModelEvaluation"
pointValues point values
geocode Georeferencing with Google
gbm.step gbm step
kfold k-fold partitioning
mahal Mahalanobis model
ssb Spatial sorting bias
threshold Find a threshold
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Type Package
Date 2017-01-08
License GPL (>= 3)
LazyLoad yes
URL http://rspatial.org/sdm/
NeedsCompilation yes
Packaged 2017-01-09 00:48:44 UTC; Robert
Repository CRAN
Date/Publication 2017-01-09 09:49:36

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