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dismo (version 1.3-14)

Species Distribution Modeling

Description

Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.

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Version

Install

install.packages('dismo')

Monthly Downloads

11,901

Version

1.3-14

License

GPL (>= 3)

Maintainer

Last Published

May 21st, 2023

Functions in dismo (1.3-14)

CirclesRange

Circles range
boxplot

Box plot of model evaluation data
DistModel

Class "DistModel"
calc.deviance

Calculate deviance
Convex Hull

Convex hull model
circleHull

Circle hull model
evaluate

Model evaluation
evaluateROCR

Model testing with the ROCR package
ModelEvaluation

Class "ModelEvaluation"
ecocrop

Ecocrop model
Geographic Distance

Geographic distance model
gbif

Data from GBIF
Anguilla data

Anguilla australis distribution data
ecolim

Ecolim model
gbm.fixed

gbm fixed
bioclim

Bioclim
InvDistW

Inverse-distance weighted model
dcEvaluate

Evaluate by distance class
density

density
gbm.holdout

gbm holdout
nicheOverlap

Niche overlap
Random null model

Random null model
gbm.interactions

gbm interactions
gbm.perspec

gbm perspective plot
Evaluation plots

Plot model evaluation data
gridSample

Stratified regular sample on a grid
kfold

k-fold partitioning
pwdSample

Pair-wise distance sampling
gbm.simplify

gbm simplify
gbm.step

gbm step
dismo-package

Species distribution modeling
domain

Domain
pointValues

point values
randomPoints

Random points
mahal

Mahalanobis model
maxent

Maxent
ssb

Spatial sorting bias
geocode

Georeferencing with Google
gbm.plot

gbm plot
threshold

Find a threshold
gbm.plot.fits

gbm plot fitted values
mess

Multivariate environmental similarity surfaces (MESS)
gmap

Get a Google map
rectHull

Rectangular hull model
response

response plots
nicheEquivalency

Niche equivalency
predict

Distribution model predictions
prepareData

Prepare data for model fitting
pairs

Pair plots
plot

Plot predictor values
voronoi

Voronoi polygons
Voronoi Hull

Voronoi hull model
biovars

bioclimatic variables
acaule

Solanum acaule data