dismo v1.3-3

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Species Distribution Modeling

Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.

Functions in dismo

Name Description
CirclesRange Circles range
bioclim Bioclim
calc.deviance Calculate deviance
acaule Solanum acaule data
circleHull Circle hull model
DistModel Class "DistModel"
biovars bioclimatic variables
ModelEvaluation Class "ModelEvaluation"
boxplot Box plot of model evaluation data
ecocrop Ecocrop model
density density
dcEvaluate Evaluate by distance class
mahal Mahalanobis model
ecolim Ecolim model
maxent Maxent
evaluate Model evaluation
gbif Data from GBIF
rectHull Rectangular hull model
response response plots
Convex Hull Convex hull model
evaluateROCR Model testing with the ROCR package
Geographic Distance Geographic distance model
domain Domain
ssb Spatial sorting bias
dismo-package Species distribution modeling
Anguilla data Anguilla australis distribution data
threshold Find a threshold
InvDistW Inverse-distance weighted model
gbm.fixed gbm fixed
gbm.simplify gbm simplify
gbm.step gbm step
geocode Georeferencing with Google
gmap Get a Google map
pairs Pair plots
pwdSample Pair-wise distance sampling
gbm.holdout gbm holdout
gridSample Stratified regular sample on a grid
plot Plot predictor values
randomPoints Random points
gbm.plot.fits gbm plot fitted values
gbm.plot gbm plot
kfold k-fold partitioning
mess Multivariate environmental similarity surfaces (MESS)
gbm.interactions gbm interactions
nicheEquivalency Niche equivalency
gbm.perspec gbm perspective plot
Evaluation plots Plot model evaluation data
nicheOverlap Niche overlap
pointValues point values
predict Distribution model predictions
Random null model Random null model
prepareData Prepare data for model fitting
voronoi Voronoi polygons
Voronoi Hull Voronoi hull model
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Vignettes of dismo

Name
brt.Rnw
sdm.Rnw
No Results!

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Details

Type Package
Date 2020-11-16
LinkingTo Rcpp
SystemRequirements Java (>= 8)
License GPL (>= 3)
LazyLoad yes
URL https://rspatial.org/raster/sdm/
BugReports https://github.com/rspatial/dismo/issues/
NeedsCompilation yes
Packaged 2020-11-16 19:09:32 UTC; rhijm
Repository CRAN
Date/Publication 2020-11-17 08:30:08 UTC

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