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dismo (version 1.3-8)

Species Distribution Modeling

Description

Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.

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Version

Install

install.packages('dismo')

Monthly Downloads

10,019

Version

1.3-8

License

GPL (>= 3)

Maintainer

Robert Hijmans

Last Published

July 18th, 2022

Functions in dismo (1.3-8)

boxplot

Box plot of model evaluation data
Anguilla data

Anguilla australis distribution data
gbif

Data from GBIF
dismo-package

Species distribution modeling
domain

Domain
density

density
gbm.perspec

gbm perspective plot
dcEvaluate

Evaluate by distance class
gbm.interactions

gbm interactions
ecocrop

Ecocrop model
gbm.fixed

gbm fixed
gbm.holdout

gbm holdout
ecolim

Ecolim model
gridSample

Stratified regular sample on a grid
mahal

Mahalanobis model
gbm.plot

gbm plot
Geographic Distance

Geographic distance model
evaluateROCR

Model testing with the ROCR package
gbm.plot.fits

gbm plot fitted values
evaluate

Model evaluation
geocode

Georeferencing with Google
gmap

Get a Google map
InvDistW

Inverse-distance weighted model
mess

Multivariate environmental similarity surfaces (MESS)
nicheEquivalency

Niche equivalency
pwdSample

Pair-wise distance sampling
nicheOverlap

Niche overlap
gbm.simplify

gbm simplify
gbm.step

gbm step
Random null model

Random null model
predict

Distribution model predictions
randomPoints

Random points
pointValues

point values
Evaluation plots

Plot model evaluation data
maxent

Maxent
Voronoi Hull

Voronoi hull model
voronoi

Voronoi polygons
prepareData

Prepare data for model fitting
ssb

Spatial sorting bias
kfold

k-fold partitioning
plot

Plot predictor values
threshold

Find a threshold
pairs

Pair plots
response

response plots
rectHull

Rectangular hull model
CirclesRange

Circles range
biovars

bioclimatic variables
DistModel

Class "DistModel"
ModelEvaluation

Class "ModelEvaluation"
circleHull

Circle hull model
calc.deviance

Calculate deviance
acaule

Solanum acaule data
Convex Hull

Convex hull model
bioclim

Bioclim