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dismo (version 1.3-9)

Species Distribution Modeling

Description

Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.

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Version

Install

install.packages('dismo')

Monthly Downloads

12,778

Version

1.3-9

License

GPL (>= 3)

Maintainer

Robert Hijmans

Last Published

September 19th, 2022

Functions in dismo (1.3-9)

calc.deviance

Calculate deviance
CirclesRange

Circles range
circleHull

Circle hull model
ModelEvaluation

Class "ModelEvaluation"
acaule

Solanum acaule data
biovars

bioclimatic variables
Convex Hull

Convex hull model
DistModel

Class "DistModel"
boxplot

Box plot of model evaluation data
bioclim

Bioclim
Anguilla data

Anguilla australis distribution data
gbif

Data from GBIF
dcEvaluate

Evaluate by distance class
density

density
domain

Domain
evaluateROCR

Model testing with the ROCR package
evaluate

Model evaluation
dismo-package

Species distribution modeling
ecolim

Ecolim model
ecocrop

Ecocrop model
gbm.plot.fits

gbm plot fitted values
gbm.interactions

gbm interactions
gbm.plot

gbm plot
Geographic Distance

Geographic distance model
InvDistW

Inverse-distance weighted model
gbm.simplify

gbm simplify
gbm.holdout

gbm holdout
gbm.step

gbm step
gbm.fixed

gbm fixed
nicheEquivalency

Niche equivalency
mess

Multivariate environmental similarity surfaces (MESS)
mahal

Mahalanobis model
gmap

Get a Google map
gbm.perspec

gbm perspective plot
nicheOverlap

Niche overlap
geocode

Georeferencing with Google
kfold

k-fold partitioning
maxent

Maxent
Random null model

Random null model
gridSample

Stratified regular sample on a grid
response

response plots
pointValues

point values
rectHull

Rectangular hull model
pwdSample

Pair-wise distance sampling
Evaluation plots

Plot model evaluation data
plot

Plot predictor values
randomPoints

Random points
pairs

Pair plots
predict

Distribution model predictions
prepareData

Prepare data for model fitting
ssb

Spatial sorting bias
threshold

Find a threshold
voronoi

Voronoi polygons
Voronoi Hull

Voronoi hull model