ann.data

A dataset containing Chlamydia pneumoniae TW-183 (complete sequence, NC_005043.1.) genome annotation

datasets

Set of tools for molecular probes selection and design of a microarray, e.g. the assessment of physical and chemical properties, blast performance, selection according to sensitivity and selectivity. Methods used in package are described in: Lorenz R., Stephan H.B., H<c3><b6>ner zu Siederdissen C. et al. (2011) <doi:10.1186/1748-7188-6-26>; Camacho C., Coulouris G., Avagyan V. et al. (2009) <doi:10.1186/1471-2105-10-421>.

Elena Filatova

disprose

Discriminating Probes Selection

Oleg Utkin

Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod, Russia 

ann.data function

A data frame with 2218 rows and 9 variables:<dl class="dl-horizontal">
 <dt>seqid</dt><dd>sequence identification number</dd>
 <dt>source</dt><dd>source database name</dd>
 <dt>type</dt><dd>type of annotated region</dd>
 <dt>start</dt><dd>region's start position</dd>
 <dt>end</dt><dd>region's end position</dd>
 <dt>score</dt><dd>score</dd>
 <dt>strand</dt><dd>strand</dd>
 <dt>phase</dt><dd>phase</dd>
 <dt>attribute</dt><dd>region description</dd>
</dl>

Format

Chlamydia pneumoniae genome annotation. — ann.data

A data frame with 2218 rows and 9 variables:<dl class='dl-horizontal'>
 <dt>seqid</dt><dd>sequence identification number</dd>
 <dt>source</dt><dd>source database name</dd>
 <dt>type</dt><dd>type of annotated region</dd>
 <dt>start</dt><dd>region's start position</dd>
 <dt>end</dt><dd>region's end position</dd>
 <dt>score</dt><dd>score</dd>
 <dt>strand</dt><dd>strand</dd>
 <dt>phase</dt><dd>phase</dd>
 <dt>attribute</dt><dd>region description</dd>
</dl>

ann.data: Chlamydia pneumoniae genome annotation.

Description

Usage

Arguments

Format