distanceHD (version 1.2)

leukemia: Gene expression data from Golub et al. (1999)

Description

Gene expression data (3051 genes and 38 tumor mRNA samples) from the leukemia microarray study of Golub et al. (1999). )

Usage

data(leukemia)

Format

A list with the following elements:

• X: a (38 by 3051) matrix giving the expression levels of 3051 genes for 38 leukemia patients. Each row corresponds to a patient, each column to a gene.

• Y: a numeric vector of length 38 giving the cancer class of each patient.

• gene.names: a matrix containing the names of the 3051 genes for the gene expression matrix X. The three columns correspond to the gene index, ID, and Name, respectively.

References

S. Dudoit, J. Fridlyand and T. P. Speed (2002). Comparison of discrimination methods for the classification of tumors using gene expression data, Journal of the American Statistical Association 97, 77-87.

Golub et al. (1999). Molecular classification of cancer: class discovery and class prediction by gene expression monitoring, Science 286, 531-537.

See Also

plsgenomics::leukemia

Examples

data(leukemia)

# how many samples and genes?
dim(leukemia$X)

# how many samples of class 1 and 2, respectively?
table(leukemia$Y)