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diveMove (version 1.0)

Dive analysis and calibration

Description

Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.

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Version

Install

install.packages('diveMove')

Monthly Downloads

296

Version

1.0

License

GPL-3

Maintainer

Sebastian Luque

Last Published

June 13th, 2010

Functions in diveMove (1.0)

bout-methods

Methods for Plotting and Extracting the Bout Ending Criterion
TDR-accessors

Coerce, Extractor, and Replacement methods for class "TDR" objects
plotTDR-methods

Methods for plotting objects of class "TDR", "TDRspeed", and "TDRcalibrate"
diveMove-package

Dive Analysis and Calibration
calibrateSpeed

Calibrate and build a "TDRcalibrate" object
bouts2MLE

Maximum Likelihood Model of mixture of 2 Poisson Processes
bouts2NLS

Fit mixture of 2 Poisson Processes to Log Frequency data
readLocs

Read comma-delimited file with location data
TDRcalibrate-class

Class "TDRcalibrate" for dive analysis
extractDive-methods

Extract Dives from "TDR" or "TDRcalibrate" Objects
calibrateDepth

Calibrate Depth and Generate a "TDRcalibrate" object
readTDR

Read comma-delimited file with "TDR" data
bout-misc

Fit a Broken Stick Model on Log Frequency Data for identification of bouts of behaviour
diveStats

Per-dive statistics
timeBudget-methods

Describe the Time Budget of Major Activities from "TDRcalibrate" object.
labDive-internal

Internal Functions used for Detection of Dives
TDR-class

Classes "TDR" and "TDRspeed" for representing TDR information
detDive-internal

Detect dives from depth readings
diveMove-internal

Internal diveMove Functions
detPhase-internal

Detect phases of activity from depth readings
distSpeed

Calculate distance and speed between locations
austFilter

Filter satellite locations
rqPlot

Plot of quantile regression for speed calibrations
zoc

Interactive zero-offset correction of "TDR" data
sealLocs

Ringed and Gray Seal ARGOS Satellite Location Data
TDRcalibrate-accessors

Methods to Show and Extract Basic Information from "TDRcalibrate" Objects
dives

Sample of TDR data from a fur seal