mcmc
for Bayesian inference).make.pgls(tree, formula, data, control=list())
ape
phylo format.lm
for details on
formulae; the interface is the same here.data
, the variables are taken from
environment(formula)
, typically the environment from
which this function is called. That may perform badly with
reconciling with species names, however."vcv"
for the
traditional variance-covariance approach (slow for large trees) or
"contrasts"
for the contrasts-based approach outlined in
Freckleton (2012).