Currently only get.descendants
docuemnted here, which
determines which species or nodes are descended from a particular
node.
get.descendants(node, tree, tips.only=FALSE, edge.index=FALSE)
run.cached(filename, expr, regenerate=FALSE)
expand.parameters(p, lik.new, repl=0, target=argnames(lik.new))
get.likelihood(object)
drop.likelihood(object)
tree$node.label
, an
integer in 1..tree$Nnode
, or in
length(tree$tip.label)..(length(tree$tip.label)+tree$Nnode)
.phylo
format.drop.likelihood
, an object that has a
likelihood
attribute to be removed (saves space on object
save); for get.likelihood
, retrieves the function.