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divo (version 1.0.0)

Tools for Analysis of Diversity and Similarity in Biological Systems

Description

A set of tools for empirical analysis of diversity (a number and frequency of different types in population) and similarity (a number and frequency of shared types in two populations) in biological or ecological systems.

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Version

Install

install.packages('divo')

Monthly Downloads

766

Version

1.0.0

License

GPL (>= 3)

Maintainer

Maciej Pietrzak

Last Published

October 18th, 2017

Functions in divo (1.0.0)

i.inp

i.inp Information Index (I index) for 2-Way, 2 Column Table

ji Jaccard Index

ens.ht

ens.ht Effective Number of Species with the Horvitz-Thompson Correction

i.in

i.in Information Index (I index) for 2-Way Table

TCR.Data

TCR.Data Repertoires of Naive and Regulatory T-cell Populations

cvg

cvg Coverage

divo

Tools for Analysis of Diversity and Similarity in Biological Systems

dp Diversity Profile

dp.ht

dp.ht Diversity Profile with the Horvitz-Thompson Adjustment

ens

ens Effective Number of Species

rd Renyi's Divergence

srd

srd Symmetrized Renyi's Divergence

Example dataset for divo package

li Sorensen Index

mh Morisita-Horn Index

pg Power-Geometric Index

pg.ht

pg.ht Power-Geometric Index with the Horvitz-Thompson Correction