dkDNA (version 0.1.1)

dkDNA-package: Diffusion kernels on a set of genotypes

Description

Compute diffusion kernels on DNA polymorphisms, including SNP and binary genotypes.

References

Kondor R and Lafferty J: (2002) Diffusion Kernels on Graphs and Other Discrete Input Spaces. ICML.

Morota G, Koyama M, Rosa GJM, Weigel KA, and Gianola D. (2013). Predicting complex traits using a diffusion kernel on genetic markers with an application to dairy cattle and wheat data. Genetics Selection Evolution. 45:17.