plot.summary.tdlnm

Method for returning variety of plots for model summary of class 'tdlnm'

Estimation of distributed lag models (DLMs) based on a Bayesian additive regression trees framework. Includes several extensions of DLMs: treed DLMs and distributed lag mixture models (Mork and Wilson, 2023) <doi:10.1111/biom.13568>; treed distributed lag nonlinear models (Mork and Wilson, 2022) <doi:10.1093/biostatistics/kxaa051>; heterogeneous DLMs (Mork, et. al., 2024) <doi:10.1080/01621459.2023.2258595>; monotone DLMs (Mork and Wilson, 2024) <doi:10.1214/23-BA1412>. The package also includes visualization tools and a 'shiny' interface to check model convergence and to help interpret results.

Daniel Mork

dlmtree

Bayesian Treed Distributed Lag Models

Seongwon Im

Ander Wilson

plot.summary.tdlnm function

<dl><dt>x</dt>
<dd>object of class 'summary.tdlnm', output of summary of 'tdlnm'</dd>
<dt>plot.type</dt>
<dd>string indicating plot type, options are 'mean' (default)
which shows mean exposure-time response surface, 'cumulative' which shows the cumulative effects per 
exposure-concentration level, 'effect' which returns a grid of exposure concentration and lag
 to determine if the credible interval contains zero, with the direction of the effect indicated,
'se', 'ci-min', 'ci-max', 'slice' which takes a slice of the plot at a given 'val' or 'time',
'animate' which creates a animation of slices of the surface plot across exposure values (requires package gganimate)</dd>
<dt>val</dt>
<dd>exposure value for slice plot</dd>
<dt>time</dt>
<dd>time value for slice plot</dd>
<dt>...</dt>
<dd>additional plotting parameters for title and labels
'flab' which sets the effect label for surface plots,
'start.time' which sets the first time value</dd></dl>

Arguments

Returns variety of plots for model summary of class 'tdlnm' — plot.summary.tdlnm

<dl>

<dt>x</dt>
<dd>object of class 'summary.tdlnm', output of summary of 'tdlnm'</dd>


<dt>plot.type</dt>
<dd>string indicating plot type, options are 'mean' (default)
which shows mean exposure-time response surface, 'cumulative' which shows the cumulative effects per 
exposure-concentration level, 'effect' which returns a grid of exposure concentration and lag
 to determine if the credible interval contains zero, with the direction of the effect indicated,
'se', 'ci-min', 'ci-max', 'slice' which takes a slice of the plot at a given 'val' or 'time',
'animate' which creates a animation of slices of the surface plot across exposure values (requires package gganimate)</dd>


<dt>val</dt>
<dd>exposure value for slice plot</dd>


<dt>time</dt>
<dd>time value for slice plot</dd>


<dt>...</dt>
<dd>additional plotting parameters for title and labels
'flab' which sets the effect label for surface plots,
'start.time' which sets the first time value</dd>

</dl>

plot.summary.tdlnm: Returns variety of plots for model summary of class 'tdlnm'

Description

Usage

Value

Arguments

Details