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dmm (version 2.1-3)

Dyadic Mixed Model for Pedigree Data

Description

Dyadic mixed model analysis with multi-trait responses and pedigree-based partitioning of individual variation into a range of environmental and genetic variance components for individual and maternal effects.

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Version

Install

install.packages('dmm')

Monthly Downloads

718

Version

2.1-3

License

GPL-2 | GPL (>= 2) | GPL-3

Maintainer

Neville Jackson

Last Published

January 19th, 2018

Functions in dmm (2.1-3)

dmm

Fit a dyadic mixed model to pedigree data
dt8bal.df

A balanced dataset with eight individuals.
dmm-internal

Functions internal to dmm
dmm-package

Dyadic mixed model analysis for pedigree data
condense.dmmblockarray

Condense an object of type dmmblockarray to an object of type dmm
csummary.dmm

Make summary tables of (co)variance component estimates sorted into class-specific classes for a dmm object.
gprint

Generic function for printing genetic parameters contained in an object of class dmm.
gprint.dmm

Print method for genetic parameters contained in an object of class dmm.
chartodec

Convert a vector from character to decimal numbers
condense.dmmarray

Condense an object of type dmmarray to an object of type dmm
harv101.df

Harvey dataset
make.countarray

Count the number of observations in a dataframe or an mdf object for all traitpairs in the supplied list of traits.
print.dmm

Print method for a dmm() fitted model object.
print.gresponse.dmm

Print method for object of class gresponse.dmm.
pedcheck

Checks that the Id, SId, and DId columns of a dataframe are valid for function dmm().
pedrenum

Renumbers the Id, SId, and DId columns of a dataframe
print.gsummary.dmm

Print method for object of class gsummary.dmm.
print.summary.dmm

Print method for an object of class summary.dmm.
make.ctable

Generates a list of vectors containing sets of variance component names
make.dmmobj

Construct an object of class dmm from user-supplied data
tstmo1.df

Dfreml example dataset
unfactor

Convert a vector from factor to numeric
gresponse.dmm

Compute response to selection, given phenotypic selection differentials.
gsummary.dmm

Make summary tables of genetic parameters for a dmm object
summary.dmm

Make summary tables of (co)variance component estimates and fixed effect estimates for a dmm object.
summary.gresponse.dmm

Summary method for object of class gresponse.dmm.
warcolak.convert

Convert warcolak data file to format required for a dataframe for dmm() or mdf().
quercus.df

Quercus example dataset
sheep.df

Demonstration sheep dataset
mdf

Prepare a dataframe for use with dmm function
merino.df

Australian Merino sheep research dataset
plot.dmm

Plot residuals from fitting dyadic model
print.csummary.dmm

Print method for object of class csummary.dmm.