dnapath (version 0.6.4)

summarize_edges: Summarize differential connections for a pathway

Description

Summarize differential connections for a pathway

Usage

summarize_edges(x, alpha_edge = NULL, monotonized = FALSE)

Arguments

x

A 'dnapath' object from dnapath.

alpha_edge

Threshold for p-values of edge DC scores. If NULL, defaults to 0.05 or the minimum possible threshold (based on the number of permutatiosn that were run).

monotonized

If TRUE, monotonized p-values are used.

Value

A tibble summarizing the differential connections in the pathway.

See Also

summarize_pathways, summarize_genes

Examples

# NOT RUN {
data(meso)
data(p53_pathways)
set.seed(0)
results <- dnapath(x = meso$gene_expression, pathway_list = p53_pathways,
                   groups = meso$groups, n_perm = 10)
summarize_edges(results[[1]])
# }