biomart_hsapiens

<p>This dataset is used by default if the connection to biomaRt fails. It
is highly recommended to retry the function call that attempted to connect to
biomaRt. Using this dataset in general may not produce the correct
results.</p>

datasets

Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.

Tyler Grimes

dnapath

Differential Network Analysis using Gene Pathways

Somnath Datta

biomart_hsapiens function

<p>A data.frame containing a mapping between entrezgene IDs and
HGNC gene symbols.</p>

biomart_hsapiens: Default mapping for entrezgene IDs and HGNC gene symbols

Description

Usage

Arguments

Format