d_pathwayC

Calculates differential network score for an entire pathway.

Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.

Tyler Grimes

dnapath

Differential Network Analysis using Gene Pathways

Somnath Datta

d_pathwayC function

<dl><dt>nw1</dt>
<dd>The association scores for network 1</dd>
<dt>nw2</dt>
<dd>The association scores for network 2</dd>
<dt>lp</dt>
<dd>The lp value to use.</dd></dl>

Arguments

C++ implementation of d_pathway — d_pathwayC

<dl>

<dt>nw1</dt>
<dd>The association scores for network 1</dd>


<dt>nw2</dt>
<dd>The association scores for network 2</dd>


<dt>lp</dt>
<dd>The lp value to use.</dd>

</dl>

d_pathwayC: C++ implementation of d_pathway

Description

Usage

Value

Arguments