format_species_name

Internal function used to format species names to be used with biomart.

internal

Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.

Tyler Grimes

dnapath

Differential Network Analysis using Gene Pathways

Somnath Datta

format_species_name function

<dl><dt>species</dt>
<dd>The species to obtain a biomart dataset for. For example:
"Homo sapiens", "m musculus", "C. elegans", or "S cerevisiae", and
"Human" and "mouse" will be converted to the format required in biomart.</dd></dl>

Arguments

Format sepcies name input. — format_species_name

<dl>

<dt>species</dt>
<dd>The species to obtain a biomart dataset for. For example:
"Homo sapiens", "m musculus", "C. elegans", or "S cerevisiae", and
"Human" and "mouse" will be converted to the format required in biomart.</dd>

</dl>

format_species_name: Format sepcies name input.

Description

Usage

Value

Arguments