init_mart

Initialize biomaRt for a given species

internal

Integrates pathway information into the differential network analysis of two gene expression datasets as described in Grimes, Potter, and Datta (2019) <doi:10.1038/s41598-019-41918-3>. Provides summary functions to break down the results at the pathway, gene, or individual connection level. The differential networks for each pathway of interest can be plotted, and the visualization will highlight any differentially expressed genes and all of the gene-gene associations that are significantly differentially connected.

Tyler Grimes

dnapath

Differential Network Analysis using Gene Pathways

Somnath Datta

init_mart function

<dl><dt>species</dt>
<dd>The species to obtain a biomart dataset for. This should be
an output from <code>format_species_name</code>.</dd></dl>

Arguments

Initialize biomaRt for a given species — init_mart

<dl>

<dt>species</dt>
<dd>The species to obtain a biomart dataset for. This should be
an output from <code>format_species_name</code>.</dd>

</dl>

init_mart: Initialize biomaRt for a given species

Description

Usage

Value

Arguments